
This blackberry lime cheesecake cupcake recipe combines the zippy freshness of lime with sweet blackberries in a creamy cheesecake base. The contrast of flavors creates a dessert that's indulgent yet balanced, perfect for special occasions or weekend baking projects.
I first created these cupcakes for my sister's garden party last summer, and they disappeared faster than anything else on the dessert table. The vibrant colors and flavor combination have become my signature dessert when I want to impress guests without spending hours in the kitchen.
Ingredients
- Graham cracker crumbs: Create a classic cheesecake base with the perfect buttery texture
- Cream cheese: Provides that essential rich, tangy foundation for authentic cheesecake flavor
- Fresh lime juice: Adds brightness that cuts through the richness of the cream cheese
- Blackberry jam: Creates a sweet fruit layer that complements the tangy lime perfectly
- Fresh blackberries: Give bursts of juicy flavor and make the presentation pop
- Heavy cream: Whipped to soft peaks creates a luxurious topping that balances the dense cheesecake
Step-by-Step Instructions
- Prepare the Crust:
- Combine graham cracker crumbs with melted butter until the mixture resembles wet sand. Press firmly into cupcake liners to create an even base about 1/4 inch thick. The pressure from your fingers or the back of a measuring spoon ensures the crust will hold together when serving.
- Mix the Cheesecake Filling:
- Beat room temperature cream cheese and sugar until completely smooth and fluffy, about 3 minutes. This step is crucial for eliminating lumps. Add eggs one at a time, fully incorporating each before adding the next. Gently mix in vanilla and lime juice until just combined, being careful not to overmix which can cause cracks.
- Layer and Assemble:
- Spoon blackberry jam onto each crust, spreading it gently to the edges. Pour the cream cheese mixture over the jam, filling each liner about 3/4 full. The batter will rise slightly during baking but settle as it cools.
- Bake to Perfection:
- Bake at 325°F for exactly 20-25 minutes until the centers are barely set but still slightly jiggly. Overbaking will cause the tops to crack and the texture to become dry. Allow to cool completely at room temperature before chilling.
- Create the Topping:
- Whip cold heavy cream to stiff peaks. This usually takes about 3-4 minutes with an electric mixer. The cream should hold its shape when the beater is lifted. Dollop generously on top of each cooled cupcake.
- Final Garnish:
- Top each cupcake with fresh blackberries and a light sprinkle of lime zest. The contrast of the dark berries against the white cream creates a stunning visual presentation.

The lime in this recipe is truly the hero ingredient. I discovered this flavor combination at a local bakery and spent weeks perfecting the ratio of lime to blackberry. The bright citrus notes wake up your taste buds while the blackberry provides the perfect sweet counterpoint.
Storage Tips
These cheesecake cupcakes will keep in the refrigerator for up to 5 days when stored in an airtight container. For best results, add the whipped cream topping and fresh fruit garnish just before serving. If you need to make them further in advance, you can freeze the plain cheesecake cupcakes without toppings for up to 3 months. Simply thaw overnight in the refrigerator and add fresh toppings before serving.
Perfect Substitutions
If blackberries are not in season, raspberries or blueberries work beautifully in this recipe. For a tropical twist, try substituting the lime with lemon and using mango puree instead of blackberry jam. Those with dietary restrictions can use gluten-free graham crackers for the crust, and dairy-free cream cheese alternatives will work though the texture may be slightly different. Coconut sugar can replace granulated sugar for a more caramel-like flavor profile.
Serving Suggestions
These cheesecake cupcakes make a stunning addition to a dessert table when arranged on a tiered stand. For an elegant dinner party, serve them alongside a small glass of limoncello or dessert wine. They pair wonderfully with coffee or tea for an afternoon treat. For a more substantial dessert experience, place each cupcake on a pool of blackberry coulis and add a sprig of fresh mint for color contrast.
Frequently Asked Questions
- → Can I use frozen blackberries instead of fresh?
Yes, you can use frozen blackberries, but thaw them beforehand and drain any excess liquid to avoid altering the consistency of the topping.
- → How can I make these gluten-free?
Substitute the graham cracker crumbs with gluten-free graham crackers or any gluten-free cookie crumbs to make this dessert gluten-free.
- → Can I prepare these cupcakes ahead of time?
Yes, these cupcakes can be made a day in advance. Store them in an airtight container in the refrigerator until ready to serve.
- → What can I use instead of heavy cream for the topping?
You can use coconut cream as a dairy-free alternative. Chill the can of coconut milk, then whip the solidified cream as a substitute for heavy cream.
- → Why is it important to chill the cupcakes before serving?
Chilling allows the cheesecake filling to firm up and enhances the flavors, ensuring a better texture and taste when served.